The Danish Euro-BioImaging Node is expanding!

The Danish Euro-BioImaging Node has applied to expand its service portfolio with the Laboratory, Automation, Screening, and Microscopy facility at the Biotech Research & Innovation Centre. The application was evaluated and highly recommended by the Euro-BioImaging Scientific Advisory Board.

LASM is a newly established core facility originating from the merging of the Light Microscopy and High-Content CRISPR Screens facilities within Biotech Research and Innovation Centre (BRIC), University of Copenhagen. The new facility has staff members specializing in supporting users and in different roles: screen design, automation, microscopy and image analysis.

LASM offers standard microscopes for daily use, but its focus is on high content microscopy and screening. LASM offers several high-throughput widefield microscopes for live-cell images (1x Evos FL Auto, 2x Olympus ScanR, and 1x Incucyte S3), a high-throughput spinning disk confocal (ImageXpress HT.AI) and a multiplexing microscope (MACSima).

In addition to the microscopes, LASM possesses an automation platform to support arrayed screening. This includes a mix of acoustic dispensers, peristaltic pumps, and pipetting robots, allowing reproducible preparation of assay plates for analysis in the high-throughput microscopes.

The automation platform can be used to support both experimental setup and staining procedures. This allows for a reduction of the amount of sample and reagents used by enabling transfer of nanoliter sized volumes, which can be especially important for working with expensive reagents or limited size samples (e.g. patient material).

LASM offers a cherry pickable drug library, as well as two whole genome human sgRNA libraries (CRISPR knock-out and activation) enabling users to select a limited panel of genes of interest to their studies. The staff is also available to help with experiment design so users can get the most out of their experiments.

Resources (both computers and software) and support for data analysis are available for both local and remote access. This includes both proprietary software from the microscope manufacturer and open-source software developed by the community, as there is a dedicated staff member intended to assist users with image and data analysis.

The facility is fully open to researchers in academia as well as external and industrial researchers.

About Danish BioImaging Node- Euro-BioImaging 
As a Life Science researcher, you have open access to high end equipment and expertise at the BioImaging Core Facility at the Aarhus University, the preclinical medicine imaging facility at Aarhus University Hospital, the Danish Molecular Bioimedical Imaging Center (DaMBIC) at the Syddansk Universitet – University of Southern Denmark, the Center for Advanced BioImaging (CAB), the Core Facility of Integrated BioImaging (CFIB) – University of Copenhagen and the DBI INFRA Image Analysis Core Facility.

Related Links

Euro-Bioimaging – Danish BioImaging
Laboratory Automation Screening and Microscopy (LASM) – University of Copenhagen
Euro-BioImaging expands! – Euro-BioImaging

A Toast for the CZI M2H boot camp!

16-27 SEPTEMBER, 2024

24 participants from all over the world took part in the Molecules to Human (M2H) boot camp in Denmark. The M2H boot camp took place in two different venues in the cities of Aarhus and Copenhagen, drawing from the combined expertise of imaging core facilities under the umbrella of the Danish BioImaging Network. The program was a combination of application and technology lectures, and hands on sessions, both on sample preparation and image acquisition setups.

” To witness the birth of the M2H community has been a true privilege. Let’s keep supporting and inspiring each other as we move forward towards the globalization of access to bioimaging technologies, and towards bridging the clinical and preclinical imaging communities with the microscopy and image analysis communities” highlights Clara Prats, Director of the Danish BioImaging National Infrastructure.
Together, we have co-created two multimodal imaging workflows going from clinical and preclinical imaging in the Aarhus University facility to microscopy imaging and image analysis at the University of Copenhagen. Importantly, the community will meet regularly to boost collaborations and mobility across the M2H members.

For more information feel free to check the detailed M2H program, and the photos of the event and social activities.

Danish BioImaging Newsletter – July 2024

 

🔬🌕 Do not miss the summer edition of the Danish Bioimaging newsletter for 2024!.
https://lnkd.in/dKKdf8pq

Summer is here 🙂 and we want to take this opportunity to update you on the latest news about the Danish Bioimaging community.

🌕  Highlights
⚪️This year, the Danish Euro-BioImaging node was selected to organize and host a unique event, the Chan Zuckerberg Initiative funded Molecule to Human Boot Camp (M2H). The Molecular to Human boot camp will be held on September 16-27th, 2024, in Denmark, between Aarhus University and Københavns Universitet – University of Copenhagen University.
⚪️Bjørnar Sporsheim participated in the BNMI Job shadowing program visiting the Core Facility for Integrated Microscopy (CFIM)
⚪️Congratulations to the DBI-INFRA Image Analysis Core Facility image analysis specialist Julia Mertesdorf for being selected for the Euro-BioImaging Cross-Node Job Shadowing program.
⚪️Meet our users!: Rikke Agerskov, PhD student at the section for Molecular and Medical biology Roskilde University. See teaser and stay tuned for the full interview!
⚪️Open calls and events

Cover Video is a 3D visualization of the vasculature and tissue morphology of mouse intestine, acquired with the ZEISS Microscopy Light Sheet 7 at the Core Facility Integrated Microscopy (CFIM), University of Copenhagen. Credits: Sample prepared and collected by Clara Prats, Hannelouise Kissow, and Jon Vergara Ucin. Consultation, clearing, imaging, and animation by Keqing Sunny Dai and Jana Harizanova.

We wish you all a very happy summer. Enjoy!
https://lnkd.in/dKKdf8pq

Danish BioImaging Newsletter – March 2023

Danish Bioimaging newsletter – March 2023

Newsletter highlights. Read newsletter.

  • Euro-BioImaging ERIC promotes its Danish BioImaging Node.
  • Mark your calendars to attend the third Image Analysis Stakeholder meeting in Copenhagen May 12th and the Second Bridging Nordic Microscopy Infrastructure (BNMI) meeting which will take place at the University of Southern Denmark in Odense from August 22nd – August 25th.
  • We’re excited to welcome our newest members of the DBI-INFRA Image Analysis Core Facility team: Martin Baiker Sørensen joins us as image analysis expert and programmer and Tricia Loo as Bioimage Analyst.
  • The first IA CF planned activity is the DBI INFRA QuPath Workshop in April 12th.
    Do not miss this opportunity

Danish Bioimaging Network Newsletter – September 2022

Please find the newsletter here

  • Newsletter highlights
    • Sonia Diaz Garcia will be coordinator of both the new national infrastructure and the network. A warm welcome to Sonia that you will get to know a lot better very shortly
    • DBI Core Facility Network event will be held on the 5-6th of December. See more and register here
    • Remember to register to the second the Image analysis Stakeholder meeting on the 28th of October organized with Alexandra Institute