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Shares

Reproducible image handling and analysis

Clara Prats January 22, 2021

A very good paper on image analysis and guidelines to avoid misshandling

Link: https://www.embopress.org/doi/full/10.15252/embj.2020105889

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COVID_19 New rules for the use of Bioimaging Facilities

Clara Prats April 27, 2020

Several Bioimaging facilities in Denmark are sharing thoughts on protocols and rules to ensure social distancing and hygienic conditions to prevent the spreading of COVID-19. Share your thoughts here

Link:

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Want to know more about the what is happening behind the scenes of neural networks? Visit Oxford’s Visual Geometry Group’s Blog

Thomas Hartig Braunstein May 2, 2019

Fun and insightful examples of the problems computer vision and classification of image content is facing. Also have a look at their online demos here: http://www.robots.ox.ac.uk/~vgg/demo/

Link: http://www.robots.ox.ac.uk/~vgg/blog/index.html

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Shared image analysis workflows

Thomas Hartig Braunstein December 17, 2018

This years Christmas gift: Check out this cool new community based website, initiated by Zeiss, that will help you save time when doing image analysis. Make your own workflows using other’s predefined modules or make you own and publish it for others to use. And it is all free!

Link: https://www.apeer.com/app/#/home

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First digital mouse 3D brain atlas

Thomas Hartig Braunstein November 29, 2018

Frontiers in Neuroinformatics: The Blue Brain Cell Atlas allows anyone to visualize every region in the mouse brain, cell-by-cell – and freely download data for new analyses and modelling.

Like “going from raw satellite images to Google Earth”, the Blue Brain Cell Atlas allows anyone to visualize every region in the mouse brain, cell-by-cell – and freely download data for new analyses and modelling.

The first digital 3D atlas of every cell in the mouse brain provides neuroscientists with previously unavailable information on major cell types, numbers and positions in all of the 737 brain regions – which could massively accelerate progress in brain science.

Link: https://blog.frontiersin.org/2018/11/28/neuroscience-blue-brain-mouse-cell-atlas/?utm_source=EM&utm_medium=F-NLT&utm_campaign=ECO_FNINF_20181100_blue-brain-cell-atlas

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Imaging cellular structures in super-resolution with SIM, STED and Localisation Microscopy: A practical comparison

Vita Solovyeva August 24, 2018

In this Scientific Reports paper authors used quantitative and correlative analyses to assess the performance of Structured Illumination Microscopy (SIM), STimulated Emission Depletion (STED) microscopy and Single Molecule Localisation Microscopy (SMLM) the aim of establishing a rough guideline regarding the suitability for typical applications and to highlight pitfalls associated with the different techniques.

Link: https://www.nature.com/articles/srep27290

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New way of using cameras will increase resolution four fold – all based on clever engeneering!

Thomas Hartig Braunstein August 15, 2018

Engineers at FAU have developed a method for increasing the resolution of digital cameras by four times without having to use larger and more expensive image sensors. This is achieved by irregularly scanning the pixels and reconstructing the image afterwards. The next step involves developing a prototype that will enable more research to be carried out.

Link: https://www.fau.eu/2018/04/26/news/research/engineers-at-fau-develop-new-scanning-method-for-digital-image-sensors/

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For all you FiJi (ImageJ) users there is a new 3D viewer coming!

Thomas Hartig Braunstein April 3, 2018

The 3D viewer in FiJi (ImageJ) will soon be optional as there is a new viewer, FPBioimage, coming that looks very promising.

Link: https://twitter.com/fantm_science

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Turn your mobile phone into a decent microscope!

Thomas Hartig Braunstein February 22, 2018

With a small efforts this paper describes how you can turn your cell phone into a decent microscope. They show a resolution down to 4.38 µm – try it out!

Link: https://www.nature.com/articles/s41598-018-21543-2

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Single metalens focuses all colors of the rainbow in one point

Thomas Hartig Braunstein January 9, 2018

Interesting science that could change the design of light microscopes and give new possibilites.

Link: https://www.nanotechnologyworld.org/single-post/2017/12/25/Single-metalens-focuses-all-colors-of-the-rainbow-in-one-point?utm_campaign=buffer&utm_content=buffera8b99&utm_medium=social&utm_source=linkedin.com

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Upcoming Events

  1. MSc degree programme in Biomedical Imaging

    August 1, 2022 - June 28, 2024 (Deadline: January 19, 2022)
  2. Fellowships, grants and career support – Core Facility Fellowships – EMBO

    January 16 @ 8:00 am - December 31 @ 5:00 pm CET
  3. DBI-INFRA QuPath Workshop

    April 12 @ 9:00 am - 5:00 pm CEST (Deadline: March 31)
  4. Biologival Imaging Course for PhD and MSc students

    April 24 @ 1:00 pm - June 21 @ 12:00 pm CEST
  5. Biophotonics PhD Course

    June 5 @ 8:00 am - June 9 @ 5:00 pm CEST

View All Events

Ongoing

  1. Sébastien Tosi joins DBI-INFRA as the Head of the IA Core Facility

    Published 2022-10-13 03:27
  2. Roadmap Infrastructure grant to Danish BioImaging – 49M DKK

    Published 2022-02-02 06:26
  3. Webinar series in the sphere of biomedical imaging focusing on health and disease

    Published 2021-11-16 05:19
  4. DBI survey on Image Analysis Needs in Life Science Research in Denmark

    Published 2021-03-14 08:44
  5. DFM reaches out to DBI – survey on the needs for a new traceable fluorescence infrastructure

    Published 2021-03-14 08:33

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New Job Postings

  1. BioImage Analyst at Harvard Medical School, Boston, USA

    Published 2023-02-23 09:37
  2. Imaging Specialist at reNEW NNF Center for Stem Cell Medicine

    Published 2023-02-07 09:41
  3. DANEMO Fellowships for Collaborative Work

    Published 2022-12-15 01:26
  4. DBI Open Call 2023 – Apply Here For Financial Support

    Published 2022-12-02 03:45
  5. 1-2 Postdoc positions in human T cell immunology at the LEO Foundation Skin Immunology Research Center

    Published 2022-05-09 10:16

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