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PRODID:-//Danish BioImaging Network - ECPv4.9.1.1//NONSGML v1.0//EN
CALSCALE:GREGORIAN
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X-ORIGINAL-URL:https://www.danishbioimaging.dk
X-WR-CALDESC:Events for Danish BioImaging Network
BEGIN:VEVENT
DTSTART;VALUE=DATE:20191104
DTEND;VALUE=DATE:20191108
DTSTAMP:20260715T032019
CREATED:20190813T095626Z
LAST-MODIFIED:20190813T095626Z
UID:3417-1572825600-1573171199@www.danishbioimaging.dk
SUMMARY:MIAP ZEISS OAD & APEER Workshop Expanding the ZEISS Microscopy Platform
DESCRIPTION:Program:\nThe goal of this 4-day workshop is to teach and train participants how to employ the ZEISS software ecosystem for their own projects in image processing\, analysis and microscope automation. \nWe will discuss the latest developments in image analysis and machine learning\, including the novel free image processing platform APEER\, which enables users to exchange image processing modules and assemble them into powerful processing workflows. You will learn how to use APEER in the cloud and how to set up a local APEER solution based on the ACQUIFER HIVE system. \nWe will show best practices and application examples in a hands-on session focused on: \n\nHow to automate image acquisition and analysis using OAD scripts (Open Application Development)\nHow to set up adaptive feedback experiment workflows in combination with APEER\, Fiji/ImageJ etc.\nHow to leverage the full potential of ZEN Blue and 3rd party image processing in your image processing and analysis workflows\nHow to create your own APEER modules\nHow to build your own local APEER server using the HIVE solution from ACQUIFER.\n\n  \nThe workshop will include lectures\, discussions and extensive hands-on sessions using the microscope infrastructure of the Life Imaging Center (LIC).\nParticipants are invited to give a talk about their workshop-related projects\, research (requirements) and custom solutions. \nParticipants are also encouraged to bring their own samples or experimental workflows\, discuss them with the teachers and derive custom solutions for their individual microscopy and image analysis challenges. Please contact us in advance about the prerequisites. \nBasic knowledge in light microscopy and scripting is required. \n  \nMore information: \nThe ZEN Blue software is a powerful and flexible microscopy software for image acquisition and analysis. Its Open Application Development (OAD) interface allows for automation of workflows to create advanced experiments that link image acquisition and analysis. This allows for example to track migrating or growing cells or change imaging parameters depending e.g. on cell morphology changes during image acquisition. \nOpen Application Development (OAD) uses powerful Python scripts inside ZEN Blue to simplify\, customize and automate your workflows. The CZI-API and BioFormats allow to access CZI files from external applications. Users can analyze and exchange their data with other external applications (e.g. FiJi\, Python\, CellProfiler\, Matlab\, Excel\,…). OAD allows to create “smart” experiments with Exp. Feedback and Exp. Designer and to modify the acquisition on-the-fly based on online image analysis and external inputs. \n  \nThe registration fee of 100 € per person covers lunch (finger food)\, refreshments and coffee & tea breaks with some snacks and sweets for all days of the workshop. \n  \nVenue:\nAlbert-Ludwigs University Freiburg\nLife Imaging Center (LIC)\nCenter for Biological Systems Analysis (ZBSA)\nHabsburgerstr. 49\n79104 Freiburg im Breisgau\nGERMANY \n  \nOrganization:\nMicroscopy and Image Analysis Platform (MIAP) \nTobias Wernet\ne-mail: tobias.wernet@zbsa.uni-freiburg.de \nSibylle Bartsch\ne-mail: sibylle.bartsch@zbsa.uni-freiburg.de \nCarl Zeiss Microscopy GmbH \nMarion Lang\ne-mail: sebastian.rhode@zeiss.com \nSebastian Rhode\ne-mail: marion.lang@zeiss.com \n
URL:https://www.danishbioimaging.dk/event/miap-zeiss-oad-apeer-workshop-expanding-the-zeiss-microscopy-platform/
LOCATION:Albert-Ludwigs University Freiburg\, Life Imaging Center (LIC) Center for Biological Systems Analysis (ZBSA)\, Habsburgerstr. 49 79104 Freiburg im Breisgau GERMANY
CATEGORIES:Workshops
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