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CFIM Image Processing PhD course 2020

June 12, 2020 - June 19, 2020

(Deadline: June 1, 2020)

In this course we will initially use Fiji to illustrate fundamental image analysis concepts, then expand to introduce other software packages such as cell profiler and Ilastik.

The students will learn what a digital image is, how and when to perform basic image processing tasks and how to combine such tasks to perform advanced image processing and segmentation, automated pixel classification and, 2D and 3D measurements. Furthermore, the student will learn basic Macro programming and how to automate analysis of many images.

The course will consist of a course preparation day (June 12th – introduction to image formation, basics on Fiji and preparation of own projects) followed by 5 days teaching (June 15-19th). The course program includes work on own project sessions with advice, supervision and support from the teachers (3 at least at all times). Within 1 week after the course, students will need to submit a course report based on the outcome from their own project.

Teaching faculty:

  • Sebastien Tossi
  • Chong Zhang

Assisted by:

  • Thomas Braunstein
  • Clara Prats
  • Pablo Hernandez Varas

For more information visit www.cfim.ku.dk/events


June 12, 2020
June 19, 2020
Event Category:
June 1, 2020




Faculty of Health and Medical Sciences
Blegdamsvej 3, building 21, 2nd floor + Google Map